Learning the geometry of expression in early Drosophila embryogenesis
February 1 2022
A job talk focused on formulating positional information encoded by the transcriptome of early development as a novel scRNAseq manifold learning algorithm.
A job talk focused on formulating positional information encoded by the transcriptome of early development as a novel scRNAseq manifold learning algorithm.
Computational techniques to analyze scRNA expression in embryogenesis
January 24 2022
A job talk on the techniques developed for a novel scRNAseq manifold learning approach for lowly differentiated tissues.
A job talk on the techniques developed for a novel scRNAseq manifold learning approach for lowly differentiated tissues.
Computational techniques to analyze pangenome evolution
August 12 2021
In this talk I give an update on my work towards advancing bioinformatic tools to understand pangenomes
In this talk I give an update on my work towards advancing bioinformatic tools to understand pangenomes
Variational stress inference
March 23 2021
With the widespread usage of live-imaging techniques, we now have an unprecendented view of the dynamics of development. However, we don't have any way to measure the mechanical state of cellular arrays in-vivo. In this talk, I outline past in-silico approaches to this problem, as well as propose a novel variational technique that performs more accurately in the presence of noise
With the widespread usage of live-imaging techniques, we now have an unprecendented view of the dynamics of development. However, we don't have any way to measure the mechanical state of cellular arrays in-vivo. In this talk, I outline past in-silico approaches to this problem, as well as propose a novel variational technique that performs more accurately in the presence of noise
Geometry of expression in early Drosophila embryogenesis
March 5 2021
A progress report on a novel scRNAseq manifold learning approach for lowly differentiated tissues.
A progress report on a novel scRNAseq manifold learning approach for lowly differentiated tissues.
Physical aspects of sequencing data
February 11 2020
A job talk
A job talk
Observing bacterial pathogen evolution with long read sequencing
October 21 2019
A talk aimed at a general purpose scientific audience.
A talk aimed at a general purpose scientific audience.
Basel Life 2019
September 9 2019
In this talk I advertise our poster for our pan-genomic graph alignment algorithm
In this talk I advertise our poster for our pan-genomic graph alignment algorithm
BIRS Oaxaca 2019
August 17 2019
In this talk I discuss our continued progress in producing a computationally scalable approach to a graph alignment algorithm
In this talk I discuss our continued progress in producing a computationally scalable approach to a graph alignment algorithm
APS March Meeting 2019
March 1 2019
Microbial AMR evolves primarily due to horizontal gene transfer arising from mobile gene elements. However most quantitative models of evolution consider a completely different regime of evolution
Microbial AMR evolves primarily due to horizontal gene transfer arising from mobile gene elements. However most quantitative models of evolution consider a completely different regime of evolution
SMBE Satellite Workshop
November 5 2018
Here I report on the results of an in-depth sequencing analysis of Carbapenemase producing bacteria isolated in Basel over the last decade using both ONT and Illumina technology
Here I report on the results of an in-depth sequencing analysis of Carbapenemase producing bacteria isolated in Basel over the last decade using both ONT and Illumina technology